Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2258745 chr13:114160910 T/C 4.56E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs2258934 chr13:114167729 A/C 3.85E-12 178 3.32 29.57 24.23 KM Plot
PCPG rs2258935 chr13:114167761 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2259702 chr12:69080728 T/G 0.000313 172 25.87 25.35 10.3 KM Plot
PCPG rs2259812 chr13:114137798 A/C 6.73E-12 172 24.17 29.95 3.32 KM Plot
PCPG rs2259960 chr13:114159482 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2259973 chr13:114158614 T/C 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260005 chr13:114158359 A/G 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260007 chr13:114158330 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260011 chr13:114157952 G/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260036 chr13:114157177 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260080 chr13:114156093 C/T 0.000383 178 24.23 28.95 3.7 KM Plot
PCPG rs2260086 chr13:114155982 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2260090 chr13:114155742 C/T 3.98E-12 178 24.38 29.5 3.32 KM Plot
PCPG rs2260111 chr13:114155257 A/G 4.44E-12 177 24.23 29.5 3.32 KM Plot